Publications
2010Oliver Kohlbacher and Knut Reinert OpenMS and TOPP: Open Source Software for LC-MS Data Analysis In: Proteome Bioinformatics, ed. by Simon J. Hubbard and Andrew R. Jones, 2009, vol. 604, chap. 14, Humana Press. Methods in Molecular Biology. 2009Robert Ahrends, Lichtner, Björn, Andreas Bertsch, Oliver Kohlbacher, Maria Trusch and Hartmut Schlüter. Application of displacement chromatography for the proteome analysis of a human plasma protein fraction J. Chromatogr. A, [epub ahead of print]. Andreas Bertsch, Andreas Leinenbach, Anton Pervukhin, Markus Lubeck, Ralf Hartmer, Carsten Baessmann, Yasser A. Elnakady, Rolf Müller, Sebastian Böcker, Christian G Huber and Oliver Kohlbacher De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation Electrophoresis 2009, 30(21):3736-3747 website Rene Hussong, Barbara Gregorius, Andreas Tholey, Andreas Hildebrandt Highly accelerated feature detection in proteomics data sets using modern graphics processing units. Bioinformatics 25:1937-1943, 2009. website Sven Nahnsen, Andreas Bertsch, Alfred Nordheim and Oliver Kohlbacher Novel probability-based consensus scoring improves identification rates in Tandem Mass spectrometry-based peptide identification In proceedings of 57th ASMS Conference on Mass Spectrometry, Philadelphia, PA, 2009 Stephan Jung, Stuart Pengelley, Andreas Bertsch, Ana Velic, Karsten Krug, Oliver Kohlbacher and Boris Macek SILAC-labeled cell/tissue lysates as a generic source of proteotypic peptides in multiple reaction monitoring analyses In proceedings of 57th ASMS Conference on Mass Spectrometry, Philadelphia, PA, 2009 Marc Sturm and Oliver Kohlbacher TOPPView: An Open-Source Viewer for Mass Spectrometry Data. Journal of Proteome Research, 2009, 2009, 8 (7), pp 3760–3763 website 2008Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher OpenMS - An open-source software framework for mass spectrometry. BMC Bioinformatics 2008, 9:163 website Hartmut Schlüter, Maria Trusch, Diana Hildebrand, Anna Schulz, Wang Shun, Alexandra Böhlick, Sebastian Bachmann and Andreas Bertsch Identifizierung von Proteinen mit der HPLC-Chip-Massenspektrometrie. Hochauflösende LC-MS mit dem HPLC-Chip-System. GIT 03 (2008) 254-256. 2007Rene Hussong, Andreas Tholey, Andreas Hildebrandt Efficient Analysis of Mass Spectrometry Data Using the Isotope Wavelet. Proceedings of 3rd International Symposium on Computational Life Science (COMPLIFE). American Institute of Physics (AIP) Proceedings Volume 940, pages 139-49, 2007. website Nico Pfeifer, Andreas Leinenbach, Christian G. Huber and Oliver Kohlbacher Statistical learning of peptide retention behavior in chromatographic separations: A new kernel-based approach for computational proteomics. BMC Bioinformatics 2007, 8:468 abstract Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian Huber and Knut Reinert A Geometric Approach for the Alignment of Liquid Chromatography-Mass Spectrometry Data. 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 6th European Conference on Computational Biology (ECCB), pages i273-i281, 2007 Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt and Knut Reinert A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectromery data. 11th International Conference on Research in Computational Molecular Biology (RECOMB) 2007, pages 473-487. Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm TOPP - The OpenMS Proteomics Pipeline. "Proceedings of the 5th European Conference on Computational Biology (ECCB 2006)" -- Bioinformatics 23(2), pages 191-7, 2007. 2006Bettina Mayr, Oliver Kohlbacher, Knut Reinert, Marc Sturm, Clemens Gröpl, Eva Lange, Christoph Klein, Christian Huber Absolute Myoglobin Quantitation in Serum by Combining Two-Dimensional Liquid Chromatography-Electrospray Ionization Mass Spectrometry and Novel Data Analysis Algorithms. Journal of Proteome Research, volume 5, pages 414-421, 2006. Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt High Accuracy Peak-Picking of Proteomics Data using Wavelet Techniques. In Proceedings of the 11th Pacific Smyposium on Biocomputing (PSB-06), pages 243-254, 2006. 2005Clemens Gröpl, Andreas Hildebrandt, Oliver Kohlbacher, Eva Lange, Marc Sturm OpenMS - a generic open source framework for HPLC/MS-based proteomics. 2005. Poster presented at the Fourth Annual World Congress of the Human Proteome Organization, August 2005, Munich. Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein Algorithms for the automated absolute quantification of diagnostic markers in complex proteomics samples. In Proceedings of the 1st International Symposium on Computational Life Science (CompLife05), pages 151-163, 2005. |